Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs62282073 chr3:141900767 T/C 1.75E-5 172 24.52 40.37 12.58 KM Plot
PCPG rs62410847 chr4:14923293 C/G 5.67E-5 171 28.3 18.2 10.73 KM Plot
PCPG rs62431196 chr6:130548232 A/G 0 177 26.27 15.88 3.17 KM Plot
PCPG rs62481355 chr7:127201664 C/T 0.00037 173 24.85 26.27 24.23 KM Plot
PCPG rs630236 chr8:104009041 G/A 2.65E-7 176 26.27 19.3 4.03 KM Plot
PCPG rs631019 chr8:104009172 T/C 2.65E-7 176 26.27 19.3 4.03 KM Plot
PCPG rs632230 chr13:37500963 A/G 4.9E-5 174 56.35 24.23 25.53 KM Plot
PCPG rs638747 chr3:80687528 A/G 0.000181 176 19.53 24.5 27.2 KM Plot
PCPG rs6414219 chr2:242544962 A/T 3.49E-5 175 25.87 29.57 20.2 KM Plot
PCPG rs641490 chr3:80693451 A/G 0.000294 178 27.4 24.02 19.53 KM Plot
PCPG rs642681 chr13:37511481 G/A 4.51E-5 176 56.35 24.17 25.7 KM Plot
PCPG rs6429430 chr1:243834477 T/G 0.000288 172 25 25.53 18.35 KM Plot
PCPG rs642994 chr8:104009578 C/G 2.65E-7 176 26.27 19.3 4.03 KM Plot
PCPG rs6430588 chr2:136554797 T/C 1.03E-6 172 9.72 24.65 25.6 KM Plot
PCPG rs6436880 chr2:230490249 C/G 1.16E-8 173 5.18 24.62 25.87 KM Plot